species:   Artha
pid:       MI0005438
parent:    ath-MIR861
paralog:   
locus:     3:17838135-17838266
matures:   ['CCUUGGAGAAAUAUGCGUCAA', 'GAUGGAUAUGUCUUCAAGGAC']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 3:17838135-17838266

0 out of bounds
20 alignments
20 proper strand
13 stranded perfect matches

                     ***********************                                              ***********************                   
GUAUCAUUGUUUUCGAACGAUGUCCUUGGAGAAAUAUGCGUCAAUGGAGUCCGUCUUCUUGAGAAGCAUUUUUGAGUGAGAAUGAUUCUCAUGAUGGAUAUGUCUUCAAGGACUUCUUUCAAACAAUGGUAC
((((((((((((..(((.((.(((((((((((.((((.(((((..((((((..((((((((((((...)))))))).))))..))))))..))))).)))).))))))))))).)).)))))))))))))))
-----------------------CCUUGGAGAAAUAUGCGUCAA---------------------------------------------------------------------------------------- l=21 a=0 c
--------------------------------------------------------------------------------------------GAUGGAUAUGUCUUCAAGGAC------------------- l=21 a=3 c*
--------------------------------------------------------------------------------------------GAUGGAUAUGUCUUCAAGGAC------------------- l=21 a=3 ma
-----------------------CCUUGGAGAAAUAUGCGUCAA---------------------------------------------------------------------------------------- l=21 a=0 ma*

---------------------------------------------------------------------------------------------------------UCAAGGACUUCUUUCAAACAAUG---- l=23 a=1 
-------------------------------------------------------------------------------------------------AUAUGUCUUCAAGGACUUCUUU------------- l=22 a=1 
-----------------------------------------------------------------------------------------------GGAUAUGUCUUCAAGGACUUC---------------- l=21 a=2 
--------------------------------------------------------------------------------------------GAUGGAUAUGUCUUCAAGGAC------------------- l=21 a=3 (c*,ma)
-------------------AUGUCCUUGGgGAAAUAUGCG-------------------------------------------------------------------------------------------- l=21 a=1 
-------------------AUGUCCUUGGAGAAAUAUGCG-------------------------------------------------------------------------------------------- l=21 a=2 
-------------------gUGUCCUUGGAGAAAUAUGCG-------------------------------------------------------------------------------------------- l=21 a=1 
-------------------AUGUCCUUGGAGAAAUAUGCGU------------------------------------------------------------------------------------------- l=22 a=1 
-------------------AUGUCCUUGGAGAAAUAUGCGUu------------------------------------------------------------------------------------------ l=23 a=2 
-----------------CGAUGUCCUUGGAGAAAUAUGa--------------------------------------------------------------------------------------------- l=22 a=1 
---------UUUUCGAACGAUGUCCUUGG------------------------------------------------------------------------------------------------------- l=20 a=1 
---------UUUUCGAACGAUGUCCUUGGAG----------------------------------------------------------------------------------------------------- l=22 a=1 
---------UUUUCGAACGAUGUCCUUGGAGu---------------------------------------------------------------------------------------------------- l=23 a=2 
---------UUUUCGAACGAUGUCCUUGGAGA---------------------------------------------------------------------------------------------------- l=23 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111100
fn-111
